Downloads¶
Work in Progress
Downloadable workshop files will be linked here once finalized for the 2026 workshop. Files are currently available on Alpine at /pl/active/courses/2025_summer/CSU_2025/q2_workshop_final/.
Workshop Data Files¶
The following files are used throughout the workshop and are available on Alpine HPC:
| File | Alpine Path | Description |
|---|---|---|
manifest_run2.txt |
QIIME2/manifest_run2.txt |
Run 2 import manifest |
manifest_run3.txt |
QIIME2/manifest_run3.txt |
Run 3 import manifest |
metadata_q2_workshop.txt |
QIIME2/metadata_q2_workshop.txt |
Full sample metadata |
metadata_q2_workshop_noECs.txt |
QIIME2/metadata_q2_workshop_noECs.txt |
Metadata without environmental controls |
2024.09.backbone.v4.nb.qza |
QIIME2/2024.09.backbone.v4.nb.qza |
GreenGenes2 V4 Naive Bayes classifier |
2022.10.backbone.sepp-reference.qza |
QIIME2/2022.10.backbone.sepp-reference.qza |
GreenGenes2 SEPP reference |
tree_gg2.qza |
QIIME2/tree_gg2.qza |
Pre-built phylogenetic tree |
visualizations.Rmd |
R/visualizations.Rmd |
R Markdown analysis script |
R.Rproj |
R/R.Rproj |
RStudio project file |
All files are under: /pl/active/courses/2025_summer/CSU_2025/q2_workshop_final/